PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.24.267.1
Common NameCHLNCDRAFT_15492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family HSF
Protein Properties Length: 93aa    MW: 11056.5 Da    PI: 8.9936
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.24.267.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-333932101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++++  + +isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll +i+
  gw1.24.267.1   3 FLTKTYELVDEAISDPIISWGADGQSFVVWKPAEFARDLLPLHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEYFLRGRRDLLGDIH 90 
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
  gw1.24.267.1  91 RRK 93 
                   *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.03E-34192IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-36192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-56192IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-30392IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-19326IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-194153IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404266IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
PPFLTKTYEL VDEAISDPII SWGADGQSFV VWKPAEFARD LLPLHFKHNN FSSFVRQLNT  60
YGFRKVDPDR WEFANEYFLR GRRDLLGDIH RRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A3e-251925106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A3e-251925106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005844236.14e-64hypothetical protein CHLNCDRAFT_15492, partial
SwissprotQ6Z9C81e-46HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLE1ZPW25e-64E1ZPW2_CHLVA; Putative uncharacterized protein (Fragment)
STRINGEDP024159e-51(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-47heat shock transcription factor A1D
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]